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The SKIRT project
advanced radiative transfer for astrophysics
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The SKIRT project
advanced radiative transfer for astrophysics
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#include <AdaptiveMeshGeometry.hpp>
Protected Member Functions | |
| AdaptiveMeshGeometry () | |
| AdaptiveMeshSnapshot * | adaptiveMesh () const override |
| Snapshot * | createAndOpenSnapshot () override |
 Protected Member Functions inherited from MeshGeometry | |
| MeshGeometry () | |
| const Box & | domain () const |
| void | setupSelfBefore () override |
| Protected Member Functions inherited from ImportedGeometry | |
| ImportedGeometry () | |
| ~ImportedGeometry () | |
| virtual Snapshot * | createAndOpenSnapshot ()=0 |
| void | setupSelfAfter () override |
| Protected Member Functions inherited from GenGeometry | |
| GenGeometry () | |
| Protected Member Functions inherited from Geometry | |
| Geometry () | |
| Random * | random () const |
| void | setupSelfBefore () override |
| Protected Member Functions inherited from SimulationItem | |
| SimulationItem () | |
| virtual bool | offersInterface (const std::type_info &interfaceTypeInfo) const |
| virtual void | setupSelfAfter () |
| virtual void | setupSelfBefore () |
| Protected Member Functions inherited from Item | |
| Item () | |
| Protected Member Functions inherited from SiteListInterface | |
| SiteListInterface () | |
| Protected Member Functions inherited from AdaptiveMeshInterface | |
| AdaptiveMeshInterface () | |
Private Types | |
| using | BaseType = MeshGeometry |
| using | ItemType = AdaptiveMeshGeometry |
Private Attributes | |
| AdaptiveMeshSnapshot * | _adaptiveMeshSnapshot |
Friends | |
| class | ItemRegistry |
Additional Inherited Members | |
| Public Types inherited from MeshGeometry | |
| enum class | MassType : int { MassDensity , Mass , NumberDensity , Number } |
| Public Member Functions inherited from MeshGeometry | |
| MassType | massType () const |
| double | maxX () const |
| double | maxY () const |
| double | maxZ () const |
| double | minX () const |
| double | minY () const |
| double | minZ () const |
| Public Member Functions inherited from ImportedGeometry | |
| double | density (Position bfr) const override |
| string | filename () const |
| Position | generatePosition () const override |
| bool | importMetallicity () const |
| bool | importTemperature () const |
| double | maxTemperature () const |
| int | numSites () const override |
| double | SigmaX () const override |
| double | SigmaY () const override |
| double | SigmaZ () const override |
| Position | sitePosition (int index) const override |
| string | useColumns () const |
| Public Member Functions inherited from GenGeometry | |
| int | dimension () const override |
| virtual double | density (Position bfr) const =0 |
| virtual int | dimension () const =0 |
| virtual Position | generatePosition () const =0 |
| virtual double | SigmaX () const =0 |
| virtual double | SigmaY () const =0 |
| virtual double | SigmaZ () const =0 |
| Public Member Functions inherited from SimulationItem | |
| template<class T > | |
| T * | find (bool setup=true) const |
| template<class T > | |
| T * | interface (int levels=-999999, bool setup=true) const |
| virtual string | itemName () const |
| void | setup () |
| string | typeAndName () const |
| Public Member Functions inherited from Item | |
| Item (const Item &)=delete | |
| virtual | ~Item () |
| void | addChild (Item *child) |
| const vector< Item * > & | children () const |
| virtual void | clearItemListProperty (const PropertyDef *property) |
| void | destroyChild (Item *child) |
| virtual bool | getBoolProperty (const PropertyDef *property) const |
| virtual vector< double > | getDoubleListProperty (const PropertyDef *property) const |
| virtual double | getDoubleProperty (const PropertyDef *property) const |
| virtual string | getEnumProperty (const PropertyDef *property) const |
| virtual int | getIntProperty (const PropertyDef *property) const |
| virtual vector< Item * > | getItemListProperty (const PropertyDef *property) const |
| virtual Item * | getItemProperty (const PropertyDef *property) const |
| virtual string | getStringProperty (const PropertyDef *property) const |
| int | getUtilityProperty (string name) const |
| virtual void | insertIntoItemListProperty (const PropertyDef *property, int index, Item *item) |
| Item & | operator= (const Item &)=delete |
| Item * | parent () const |
| virtual void | removeFromItemListProperty (const PropertyDef *property, int index) |
| virtual void | setBoolProperty (const PropertyDef *property, bool value) |
| virtual void | setDoubleListProperty (const PropertyDef *property, vector< double > value) |
| virtual void | setDoubleProperty (const PropertyDef *property, double value) |
| virtual void | setEnumProperty (const PropertyDef *property, string value) |
| virtual void | setIntProperty (const PropertyDef *property, int value) |
| virtual void | setItemProperty (const PropertyDef *property, Item *item) |
| virtual void | setStringProperty (const PropertyDef *property, string value) |
| void | setUtilityProperty (string name, int value) |
| virtual string | type () const |
| Public Member Functions inherited from SiteListInterface | |
| virtual | ~SiteListInterface () |
| virtual int | numSites () const =0 |
| virtual Position | sitePosition (int index) const =0 |
| Public Member Functions inherited from AdaptiveMeshInterface | |
| virtual | ~AdaptiveMeshInterface () |
| virtual AdaptiveMeshSnapshot * | adaptiveMesh () const =0 |
An AdaptiveMeshGeometry instance represents a 3D geometry with a spatial density distribution described by an Adaptive Mesh Refinement (AMR) grid partitioning a cuboidal domain. The data is usually extracted from a cosmological simulation snapshot, and it must be provided in a column text file formatted as described below. The total mass in the geometry is normalized to unity after importing the data.
Refer to the description of the AdaptiveMeshSnapshot class for information on the structure of an adaptive mesh and on how to represent it in text column file format. Refer to the description of the TextInFile class for information on overall formatting and on how to include header lines specifying the units for each column in the input file. In case the input file has no unit specifications, the default units mentioned below are used instead. The input file should contain 1, 2, or 3 columns, depending on the options configured by the user for this AdaptiveMeshGeometry instance:
\[ \{\, \rho\,(\text{M}_\odot\,\text{pc}^{-3}) \;\;|\;\; M\,(\text{M}_\odot) \;\;|\;\; n\,(\text{cm}^{-3}) \;\;|\;\; N\,(1) \,\} \quad [Z\,(1)] \quad [T\,(\mathrm{K})] \]
Depending on the value of the massType option, the first column lists the average mass density \(\rho\), the integrated mass \(M\), the average number density \(n\), or the integrated number density \(N\) for the cell corresponding to the site. The precise units for this field are irrelevant because the total mass in the geometry will be normalized to unity after importing the data. However, the import procedure still insists on knowing the units.
If the importMetallicity option is enabled, the next column specifies a "metallicity" fraction, which in this context is simply multiplied with the mass/density column to obtain the actual mass/density of the cell. If the importTemperature option is enabled, the next column specifies a temperature. If this temperature is higher than the maximum configured temperature, the mass and density for the site are set to zero, regardless of the mass or density specified in the fourth column. If the importTemperature option is disabled, or the maximum temperature value is set to zero, such a cutoff is not applied.
When an item of this type is used, the names provided by the conditional value expression "AdaptiveMeshInterface" are inserted into the name sets used for evaluating Boolean expressions.
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inlineprotected |
Default constructor for concrete Item subclass AdaptiveMeshGeometry : "a geometry imported from data represented on an adaptive mesh (AMR grid)" .
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overrideprotectedvirtual |
This function implements the AdaptiveMeshInterface interface. It returns a pointer to the adaptive mesh snapshot maintained by this geometry.
Implements AdaptiveMeshInterface.
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overrideprotectedvirtual |
This function constructs a new AdaptiveMeshSnapshot object, calls its open() function, passes it the domain extent configured by the user, configures it to import a mass or a density column, and finally returns a pointer to the object. Ownership of the Snapshot object is transferred to the caller.
Implements ImportedGeometry.